Expression analysis using DNA microarrays demonstrates that E2F-1 up-regulates expression of DNA replication genes including replication protein A2

Oncogene. 2001 Mar 15;20(11):1379-87. doi: 10.1038/sj.onc.1204230.

Abstract

The transcription factor E2F-1 plays a pivotal role in the regulation of G1/S transition in higher eukaryotes cell cycle. We used a cell line containing an inducible E2F-1 and oligonucleotide microarray analysis to identify novel E2F target genes. We show that E2F-1 up-regulates the expression of a number of genes coding for components of the DNA replication machinery. Among them is the gene coding for the 32 Kd subunit of replication protein A (RPA2). Replication protein A is the most abundant single strand DNA binding complex and it is essential for DNA replication. We demonstrate that RPA2 is a novel E2F target gene whose expression can be directly regulated by E2F-1 via E2F binding sites in its promoter. In addition, expression of Topoisomerase IIalpha and subunit IV of DNA polymerase alpha is also up-regulated upon E2F-1 induction. Taken together, these results provide novel links between components of the DNA replication machinery and the cell growth regulatory pathway involving the Rb tumor suppressor and E2F.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigens, Neoplasm
  • Base Sequence
  • Carrier Proteins*
  • Cell Cycle Proteins*
  • DNA Polymerase I / biosynthesis
  • DNA Replication / genetics*
  • DNA Topoisomerases, Type II* / biosynthesis
  • DNA-Binding Proteins / biosynthesis
  • DNA-Binding Proteins / genetics*
  • E2F Transcription Factors
  • E2F1 Transcription Factor
  • Gene Expression Profiling
  • Humans
  • Isoenzymes / biosynthesis
  • Molecular Sequence Data
  • Oligonucleotide Array Sequence Analysis
  • Promoter Regions, Genetic
  • Protein Subunits
  • Replication Protein A
  • Retinoblastoma-Binding Protein 1
  • Transcription Factor DP1
  • Transcription Factors / metabolism*
  • Up-Regulation

Substances

  • Antigens, Neoplasm
  • Carrier Proteins
  • Cell Cycle Proteins
  • DNA-Binding Proteins
  • E2F Transcription Factors
  • E2F1 Transcription Factor
  • E2F1 protein, human
  • Isoenzymes
  • Protein Subunits
  • RPA1 protein, human
  • Replication Protein A
  • Retinoblastoma-Binding Protein 1
  • Transcription Factor DP1
  • Transcription Factors
  • DNA Polymerase I
  • DNA Topoisomerases, Type II