The role of the protein core in the inhibitory power of the classic serine protease inhibitor, chymotrypsin inhibitor 2

Biochemistry. 2003 Jun 3;42(21):6484-92. doi: 10.1021/bi034275d.

Abstract

A synthetic cyclic peptide, reported to be a tight-binding inhibitor of serine proteases, is instead found to be a good substrate, as is the linear peptide of the same sequence. Both of the peptides, designed to mimic the binding loop of chymotrypsin inhibitor 2 (CI2), were cleaved by subtilisin primarily at the CI2 reactive-site Met-59-Glu-60 bond, revealing that the sequence, in the absence of the structural context of the inhibitor, provides sufficient specificity for hydrolysis of this bond. Insights from the crystal structure of the CI2/subtilisin complex, together with biochemical analysis of a CI2 Gly-83 deletion mutant, have allowed us to identify key features that make CI2 an effective inhibitor, while the cyclic and linear peptides are substrates.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Bacillus subtilis / metabolism
  • Dose-Response Relationship, Drug
  • Escherichia coli / metabolism
  • Gene Deletion
  • Hydrogen Bonding
  • Hydrolysis
  • Kinetics
  • Models, Molecular
  • Mutation
  • Peptides / chemistry*
  • Plant Proteins
  • Protein Structure, Tertiary
  • Proteins / chemistry
  • Recombinant Proteins / chemistry
  • Serine Proteinase Inhibitors / pharmacology*
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • Time Factors

Substances

  • Peptides
  • Plant Proteins
  • Proteins
  • Recombinant Proteins
  • Serine Proteinase Inhibitors
  • chymotrypsin inhibitor 2