Nucleotide sequence of carnation ringspot dianthovirus RNA-2

J Gen Virol. 1992 Sep:73 ( Pt 9):2479-82. doi: 10.1099/0022-1317-73-9-2479.

Abstract

RNA-2 of carnation ringspot virus (CRSV), the type member of the dianthovirus group, has been cDNA cloned and sequenced. CRSV RNA-2 is 1394 nucleotides in length and contains a single open reading frame encoding a 304 amino acid polypeptide of 33.8K. Amino acid sequence alignment of this polypeptide with the cell-to-cell movement proteins encoded by RNA-2 of red clover necrotic mosaic virus (RCNMV) Australian (Aus) and Czechoslovakian (TpM-34) isolates indicates 59.6% and 55.7% sequence identity, respectively. The N-terminal 230 amino acids are more highly conserved, with 64.3% and 62.6% sequence identity, respectively. The cell-to-cell movement proteins of the two RCNMV isolates are themselves 82.5% and 91.7% identical when the amino-terminal 230 amino acids are compared. Structural prediction comparison of the RCNMV-Aus, RCNMV-TpM-34 and tobacco mosaic virus cell-to-cell movement proteins to the putative CRSV RNA-2-encoded movement protein suggests that even though no primary amino acid sequence similarity exists, the movement protein polypeptides are possibly similar in structure and function.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Carrier Proteins / genetics*
  • Intracellular Signaling Peptides and Proteins
  • Molecular Sequence Data
  • Plant Viruses / genetics*
  • Plants / microbiology*
  • Protein Conformation
  • RNA, Viral / genetics*
  • Sequence Homology, Amino Acid
  • Viral Proteins / genetics*

Substances

  • Carrier Proteins
  • Intracellular Signaling Peptides and Proteins
  • RNA, Viral
  • Viral Proteins
  • cell-to-cell transport protein, odontoglossum ringspot virus

Associated data

  • GENBANK/D10949
  • GENBANK/L07666
  • GENBANK/L07667
  • GENBANK/L07668
  • GENBANK/L07669
  • GENBANK/L07670
  • GENBANK/L07671
  • GENBANK/L07672
  • GENBANK/L07673
  • GENBANK/M88589