Linkage analysis of a derived glucose phenotype in the Genetic Analysis Workshop 13 simulated data using a variety of Haseman-Elston based regression methods

BMC Genet. 2003 Dec 31;4 Suppl 1(Suppl 1):S6. doi: 10.1186/1471-2156-4-S1-S6.

Abstract

A variety of Haseman-Elston type regression procedures were used to perform a genome scan across five chromosomes, using replicates 1-5 of the Genetic Analysis Workshop 13 simulated data. The traits of interest were variables corresponding to 'baseline' and 'slope' effects derived from the fasting glucose phenotypes. Performance in terms of detecting the locations of known trait loci was poor for all methods, even when all five replicates were combined to produce a large data set (9230 sib pairs). All methods performed well, however, when applied to new simulated data in which the true genetic effects were allowed to explain a greater proportion of the overall variance.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult Children
  • Blood Glucose / genetics*
  • Blood Glucose / physiology
  • Computer Simulation / statistics & numerical data*
  • Fasting / blood
  • Female
  • Genetic Linkage / genetics*
  • Humans
  • Longitudinal Studies
  • Male
  • Matched-Pair Analysis
  • Models, Statistical*
  • Phenotype
  • Quantitative Trait Loci / genetics
  • Regression Analysis
  • Siblings

Substances

  • Blood Glucose