CGH-Explorer: a program for analysis of array-CGH data

Ole Christian Lingjaerde; Lars O Baumbusch; Knut Liestøl; Ingrid K Glad; Anne-Lise Børresen-Dale

doi:10.1093/bioinformatics/bti113

CGH-Explorer: a program for analysis of array-CGH data

Bioinformatics. 2005 Mar;21(6):821-2. doi: 10.1093/bioinformatics/bti113. Epub 2004 Nov 5.

Authors

Ole Christian Lingjaerde¹, Lars O Baumbusch, Knut Liestøl, Ingrid K Glad, Anne-Lise Børresen-Dale

Affiliation

¹ Department of Informatics, University of Oslo, PO Box 1080 Blindern, N-0316 Oslo, Norway. ole@ifi.uio.no

PMID: 15531610
DOI: 10.1093/bioinformatics/bti113

Abstract

CGH-Explorer is a program for visualization and statistical analysis of microarray-based comparative genomic hybridization (array-CGH) data. The program has preprocessing facilities, tools for graphical exploration of individual arrays or groups of arrays, and tools for statistical identification of regions of amplification and deletion.

Publication types

Evaluation Study

MeSH terms

Computer Graphics
DNA Mutational Analysis / methods*
Gene Dosage
Gene Expression Profiling / methods*
Genetic Variation / genetics
In Situ Hybridization / methods*
Oligonucleotide Array Sequence Analysis / methods*
Sequence Analysis, DNA / methods*
Software*
User-Computer Interface*