A dimensionless fit measure for phylogenetic distance trees

J Bioinform Comput Biol. 2005 Dec;3(6):1429-40. doi: 10.1142/s0219720005001636.

Abstract

We present a dimensionless fit index for phylogenetic trees that have been constructed from distance matrices. It is designed to measure the quality of the fit of the data to a tree in absolute terms, independent of linear transformations on the distance matrix. The index can be used as an absolute measure to evaluate how well a set of data fits to a tree, or as a relative measure to compare different methods that are expected to produce the same tree. The usefulness of the index is demonstrated in three examples.

MeSH terms

  • Algorithms*
  • Biological Evolution*
  • Data Interpretation, Statistical
  • Evolution, Molecular*
  • Models, Genetic*
  • Models, Statistical*
  • Numerical Analysis, Computer-Assisted*
  • Phylogeny*