Characterization of AMA, a new AAA protein from Archaeoglobus and methanogenic archaea

J Struct Biol. 2006 Oct;156(1):130-8. doi: 10.1016/j.jsb.2006.03.010. Epub 2006 Apr 18.

Abstract

We have previously reported a new group of AAA proteins, which is only found in Archaeoglobus and methanogenic archaea (AMA). The proteins are phylogenetically basal to the metalloprotease clade and their N-terminal domain is homologous to the beta-clam part of the N-domain of CDC48-like proteins. Here we report the biochemical and biophysical characterization of Archaeoglobus fulgidus AMA, and of its isolated N-terminal (AMA-N) and ATPase (AMA-DeltaN) domains. AfAMA forms hexameric complexes, as does AMA-N, while AMA-DeltaN only forms dimers. The ability to hexamerize is dependent on the integrity of a GYPL motif in AMA-N, which resembles the pore motif of FtsH and HslU. While the physiological function of AMA is unknown, we show that it has ATP-dependent chaperone activity and can prevent the thermal aggregation of proteins in vitro. The ability to interact with non-native proteins resides in the N-domain and is energy-independent.

Publication types

  • Comparative Study

MeSH terms

  • Adenosine Triphosphatases / chemistry*
  • Adenosine Triphosphatases / genetics
  • Adenosine Triphosphatases / isolation & purification
  • Adenosine Triphosphatases / metabolism*
  • Adenosine Triphosphatases / ultrastructure
  • Amino Acid Motifs
  • Amino Acid Sequence
  • Archaea / enzymology*
  • Archaeal Proteins / chemistry*
  • Archaeal Proteins / genetics
  • Archaeal Proteins / isolation & purification
  • Archaeal Proteins / metabolism*
  • Archaeal Proteins / ultrastructure
  • Archaeoglobus / enzymology*
  • Circular Dichroism
  • Cloning, Molecular
  • Enzyme Stability
  • Molecular Sequence Data
  • Molecular Weight
  • Phylogeny
  • Protein Binding
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Recombinant Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Temperature

Substances

  • Archaeal Proteins
  • Recombinant Proteins
  • Adenosine Triphosphatases