Crystal structure and enzymatic properties of a bacterial family 19 chitinase reveal differences from plant enzymes

FEBS J. 2006 Nov;273(21):4889-900. doi: 10.1111/j.1742-4658.2006.05487.x. Epub 2006 Sep 28.

Abstract

We describe the cloning, overexpression, purification, characterization and crystal structure of chitinase G, a single-domain family 19 chitinase from the Gram-positive bacterium Streptomyces coelicolor A3(2). Although chitinase G was not capable of releasing 4-methylumbelliferyl from artificial chitooligosaccharide substrates, it was capable of degrading longer chitooligosaccharides at rates similar to those observed for other chitinases. The enzyme was also capable of degrading a colored colloidal chitin substrate (carboxymethyl-chitin-remazol-brilliant violet) and a small, presumably amorphous, subfraction of alpha-chitin and beta-chitin, but was not capable of degrading crystalline chitin completely. The crystal structures of chitinase G and a related Streptomyces chitinase, chitinase C [Kezuka Y, Ohishi M, Itoh Y, Watanabe J, Mitsutomi M, Watanabe T & Nonaka T (2006) J Mol Biol358, 472-484], showed that these bacterial family 19 chitinases lack several loops that extend the substrate-binding grooves in family 19 chitinases from plants. In accordance with these structural features, detailed analysis of the degradation of chitooligosaccharides by chitinase G showed that the enzyme has only four subsites (- 2 to + 2), as opposed to six (- 3 to + 3) for plant enzymes. The most prominent structural difference leading to reduced size of the substrate-binding groove is the deletion of a 13-residue loop between the two putatively catalytic glutamates. The importance of these two residues for catalysis was confirmed by a site-directed mutagenesis study.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Catalytic Domain
  • Chitin / metabolism
  • Chitinases / chemistry*
  • Chitinases / genetics
  • Crystallization
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation
  • Oligosaccharides / chemistry
  • Plant Proteins / chemistry
  • Plant Proteins / genetics
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Streptomyces coelicolor / enzymology*
  • Substrate Specificity

Substances

  • Bacterial Proteins
  • Oligosaccharides
  • Plant Proteins
  • Recombinant Proteins
  • Chitin
  • Chitinases