Discovery of differentially expressed genes: technical considerations

Methods Mol Biol. 2007:360:115-29. doi: 10.1385/1-59745-165-7:115.

Abstract

Identification and characterization of differentially expressed genes may be an important first step toward the understanding of both normal physiology and disease. A multitude of techniques belonging to two main categories have been developed to identify the differences in gene expression between samples from different biological origin: selection techniques and global techniques. Whereas the selection techniques strive to identify specific differentially expressed genes, the global techniques analyze the total transcriptome or a major part of the RNA population in a defined biological material. By exploiting the known sequences of the adaptors used in suppressive subtraction hybridization technique, a strategy named novel rescue-suppression-subtractive hybridization was developed. It should facilitate the discovery of differentially expressed genes.

Publication types

  • Review

MeSH terms

  • Cloning, Molecular / methods
  • Drug Design*
  • Expressed Sequence Tags
  • Gene Expression Profiling / methods*
  • Humans
  • In Situ Hybridization / methods
  • Molecular Diagnostic Techniques / methods*
  • Oligonucleotide Array Sequence Analysis
  • Polymerase Chain Reaction