Structural Insight into concerted inhibition of alpha 2 beta 2-type aspartate kinase from Corynebacterium glutamicum

J Mol Biol. 2007 Apr 27;368(2):521-36. doi: 10.1016/j.jmb.2007.02.017. Epub 2007 Feb 20.

Abstract

Aspartate kinase (AK) catalyzes the first step of the biosynthesis of the aspartic acid family amino acids, and is regulated via feedback inhibition by end-products including Thr and Lys. To elucidate the mechanism of this inhibition, we determined the crystal structure of the regulatory subunit of AK from Corynebacterium glutamicum at 1.58 A resolution in the Thr-binding form, the first crystal structure of the regulatory subunit of alpha(2)beta(2)-type AK. The regulatory subunit contains two ACT domain motifs per monomer and is arranged as a dimer. Two non-equivalent ACT domains from different chains form an effector-binding unit that binds a single Thr molecule, and the resulting two effector-binding units of the dimer associate perpendicularly in a face-to-face manner. The regulatory subunit is a monomer in the absence of Thr but becomes a dimer by adding Thr. The dimerization is eliminated in mutant AKs with changes in the Thr-binding region, suggesting that the dimerization induced by Thr binding is a key step in the inhibitory mechanism of AK from C. glutamicum. A putative Lys-binding site and the inhibitory mechanism of CgAK are discussed.

MeSH terms

  • Amino Acid Sequence
  • Aspartate Kinase / antagonists & inhibitors*
  • Aspartate Kinase / chemistry*
  • Binding Sites
  • Corynebacterium glutamicum / drug effects
  • Corynebacterium glutamicum / enzymology*
  • Crystallography, X-Ray
  • Cysteine / analogs & derivatives
  • Cysteine / pharmacology
  • Dimerization
  • Drug Resistance, Microbial
  • Feedback, Physiological* / drug effects
  • Ligands
  • Lysine / metabolism
  • Molecular Sequence Data
  • Molecular Weight
  • Mutant Proteins / chemistry
  • Mutation / genetics
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Recombinant Proteins / metabolism
  • Structure-Activity Relationship
  • Threonine / metabolism

Substances

  • Ligands
  • Mutant Proteins
  • Recombinant Proteins
  • S-2-aminoethyl cysteine
  • Threonine
  • Aspartate Kinase
  • Lysine
  • Cysteine

Associated data

  • PDB/2DTJ