We examined the concentrations of polychlorinated dibenzo-p-dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs) and dioxin-like polychlorinated biphenyls (dioxin-like PCBs) in muscle and gut tissues from Japanese common squid and saury. These body parts are often eaten in Japan, so it is important to measure their dioxin concentrations and evaluate the risks to consumers. The toxic equivalent (TEQ) concentrations in the squid gut samples (1.0 to 14 pg-TEQ/g fresh weight, n=3) were 50-fold larger than those in the muscle tissues (0.020 to 0.22 pg-TEQ/g fresh weight, n = 3) taken from the same samples. By contrast, the TEQ concentrations in the saury gut samples (0.35 to 0.63 pg-TEQ/g fresh weight, n=3) were only 1.1- to 1.7-fold greater than those in the muscle tissues (0.33 to 0.37 pg-TEQ/g fresh weight, n= 3) from the same samples. The TEQ contents in the squid gut tissues ranged from 60 to 990 pg-TEQ/squid, accounting for about 95% of the total dioxin content of the edible parts of the samples. By contrast, the TEQ contents in the saury gut tissues ranged from 4.4 to 12 pg-TEQ/saury, accounting for less than 25% of the total dioxin content of the edible parts of the samples. These tissues showed comparable PCDD/PCDF-congener and dioxin-like PCB-isomer profiles in both species. The results indicate that squid gut tissues occasionally contain high levels of dioxins, and consumption of this foodstuff could potentially significantly increase the dietary intake of dioxins.