Identification of novel genes involved in long-chain n-alkane degradation by Acinetobacter sp. strain DSM 17874

Appl Environ Microbiol. 2007 May;73(10):3327-32. doi: 10.1128/AEM.00064-07. Epub 2007 Mar 30.

Abstract

Acinetobacter sp. strain DSM 17874 is capable of utilizing n-alkanes with chain lengths ranging from that of decane (C10H22) to that of tetracontane (C40H82) as a sole carbon source. Two genes encoding AlkB-type alkane hydroxylase homologues, designated alkMa and alkMb, have been shown to be involved in the degradation of n-alkanes with chain lengths of from 10 to 20 C atoms in this strain. Here, we describe a novel high-throughput screening method and the screening of a transposon mutant library to identify genes involved in the degradation of n-alkanes with C chain lengths longer than 20, which are solid at 30 degrees C, the optimal growth temperature for Acinetobacter sp. strain DSM 17874. A library consisting of approximately 6,800 Acinetobacter sp. strain DSM 17874 transposon mutants was constructed and screened for mutants unable to grow on dotriacontane (C32H66) while simultaneously showing wild-type growth characteristics on shorter-chain n-alkanes. For 23 such mutants isolated, the genes inactivated by transposon insertion were identified. Targeted inactivation and complementation studies of one of these genes, designated almA and encoding a putative flavin-binding monooxygenase, confirmed its involvement in the strain's metabolism of long-chain n-alkanes. To our knowledge, almA represents the first cloned gene shown to be involved in the bacterial degradation of long-chain n-alkanes of 32 C's and longer. Genes encoding AlmA homologues were also identified in other long-chain n-alkane-degrading Acinetobacter strains.

MeSH terms

  • Acinetobacter / enzymology
  • Acinetobacter / genetics
  • Acinetobacter / growth & development
  • Acinetobacter / metabolism*
  • Alkanes / metabolism*
  • Biodegradation, Environmental
  • Carbon / metabolism
  • Cloning, Molecular
  • DNA Transposable Elements
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Gene Deletion
  • Genetic Complementation Test
  • Molecular Sequence Data
  • Mutagenesis, Insertional
  • Oxygenases / genetics*
  • Oxygenases / metabolism*
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid

Substances

  • Alkanes
  • DNA Transposable Elements
  • DNA, Bacterial
  • Carbon
  • Oxygenases
  • dimethylaniline monooxygenase (N-oxide forming)

Associated data

  • GENBANK/EF212873
  • GENBANK/EF212874
  • GENBANK/EF212875