Light-triggered beta-hairpin folding and unfolding

Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15729-34. doi: 10.1073/pnas.0707322104. Epub 2007 Sep 24.

Abstract

A light-switchable peptide is transformed with ultrashort pulses from a beta-hairpin to an unfolded hydrophobic cluster and vice versa. The structural changes are monitored by mid-IR probing. Instantaneous normal mode analysis with a Hamiltonian combining density functional theory with molecular mechanics is used to interpret the absorption transients. Illumination of the beta-hairpin state triggers an unfolding reaction that visits several intermediates and reaches the unfolded state within a few nanoseconds. In this unfolding reaction to the equilibrium hydrophobic cluster conformation, the system does not meet significant barriers on the free-energy surface. The reverse folding process takes much longer because it occurs on the time scale of 30 micros. The folded state has a defined structure, and its formation requires an extended search for the correct hydrogen-bond pattern of the beta-strand.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amides / chemistry
  • Carbon
  • Light
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Oxygen
  • Peptides / chemistry
  • Peptides / metabolism
  • Protein Conformation
  • Protein Denaturation*
  • Protein Folding*
  • Protein Structure, Secondary
  • Spectrophotometry, Infrared

Substances

  • Amides
  • Peptides
  • Carbon
  • Oxygen