Molecular building kit of fused-proline-derived peptide mimetics allowing specific adjustment of the dihedral Psi angle

J Org Chem. 2007 Nov 23;72(24):9102-13. doi: 10.1021/jo701703e. Epub 2007 Oct 24.

Abstract

Proline-derived peptide mimetics have become an area of paramount importance in peptide and protein chemistry. Since protein crystal structures frequently display Psi angles of 140-170 degrees for prolyl moieties, our intention was to design a completely novel series of 2,3-fused-proline-derived lactams covering this particular conformational space. Extending our recently described toolset of spirocyclic reverse-turn mimetics, we synthesized pyrrolidinyl-fused seven-, eight-, and nine-membered unsaturated lactam model peptides taking advantage of Grubbs' ring-closing metathesis. Investigating the seven-membered lactam 3a by means of IR and NMR spectroscopy and semiempirical molecular dynamics simulations, we could not observe a U-turn conformation; however, increasing the ring size to give eight- and nine-membered congeners revealed moderate and high type IotaIota beta-turn inducing properties. Interestingly, the conformational properties of our model systems depend on both the ring size of the fused dehydro-Freidinger lactam and the position of the endocyclic double bond. Superior reverse-turn inducing properties could be observed for the fused azacyclononenone 3e. According to diagnostic transanular NOEs, a discrete folding principle of the lactam ring strongly deviating from the regioisomeric lactams 3c,f explains the conformational behavior. Hence, we were able to establish a molecular building kit that allows adjustments of a wide range of naturally occurring proline Psi angles and thus can be exploited to probe molecular recognition and functional properties of biological systems.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Biomimetic Materials / chemical synthesis*
  • Isomerism
  • Lactams / chemical synthesis
  • Magnetic Resonance Spectroscopy
  • Molecular Sequence Data
  • Peptides / chemical synthesis*
  • Proline / analogs & derivatives*
  • Protein Conformation
  • Protein Folding
  • Pyrrolidines / chemistry
  • Spectroscopy, Fourier Transform Infrared

Substances

  • Lactams
  • Peptides
  • Pyrrolidines
  • Proline