Exploring population genetic models with recombination using efficient forward-time simulations

Genetics. 2008 Apr;178(4):2417-27. doi: 10.1534/genetics.107.085332.

Abstract

We present an exact forward-in-time algorithm that can efficiently simulate the evolution of a finite population under the Wright-Fisher model. We used simulations based on this algorithm to verify the accuracy of the ancestral recombination graph approximation by comparing it to the exact Wright-Fisher scenario. We find that the recombination graph is generally a very good approximation for models with complete outcrossing, whereas, for models with self-fertilization, the approximation becomes slightly inexact for some combinations of selfing and recombination parameters.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Algorithms
  • Chromosomes
  • Computer Simulation*
  • Haplotypes
  • Humans
  • Models, Genetic*
  • Population Dynamics
  • Recombination, Genetic / genetics*
  • Time Factors