Haplotype analysis of the matrix metalloproteinase-9 gene associated with advanced-stage endometriosis

Fertil Steril. 2009 Jun;91(6):2324-30. doi: 10.1016/j.fertnstert.2008.03.047. Epub 2008 Jun 12.

Abstract

Objective: To investigate whether the -1562C>T, R279Q, P574R, and R668Q polymorphisms of the matrix metalloproteinase-9 (MMP-9) gene are related to endometriosis.

Design: Case-control study.

Setting: University-based hospital in Korea.

Patient(s): Patients with endometriosis stage III/IV (n = 225) who underwent pelvic surgery and controls (n = 198) with no endometriosis in a Korean population.

Intervention(s): Peripheral blood samples were collected by venipuncture.

Main outcome measure(s): Frequencies of genotypes and haplotypes were compared with the risk of endometriosis including -1562C>T, R279Q, P574R, and R668Q polymorphisms of MMP-9.

Result(s): In the two-locus haplotype analyses using the four single nucleotide polymorphisms (SNPs), an increase in the distribution of the R279Q/P574R (2678G>A/4859C>G) (AC haplotype: odds ratio [OR] = 3.180, 95% confidence interval [CI] = 1.956-5.170; GG haplotype: OR = 4.374, 95% CI = 2.376-8.053) and -1562C>T/R668Q (-1562C>T/5546G>A) (CA haplotype: OR = 3.280, 95% CI = 1.406-7.653) haplotypes was significantly associated with endometriosis. By contrast, the risk of endometriosis was not associated with the individual SNPs studied.

Conclusion(s): These findings suggest that haplotype analysis was more informative than SNP analysis. The haplotypes in the MMP-9 gene may correlate with the progression of endometriosis, and further study of these variations might improve our understanding of the pathogenesis of endometriosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • DNA Primers
  • Endometriosis / enzymology
  • Endometriosis / genetics*
  • Endometriosis / pathology
  • Endometriosis / surgery
  • Endometrium / enzymology
  • Female
  • Gene Frequency
  • Haplotypes*
  • Humans
  • Matrix Metalloproteinase 9 / genetics*
  • Polymerase Chain Reaction
  • Polymorphism, Single Nucleotide*
  • Reference Values

Substances

  • DNA Primers
  • Matrix Metalloproteinase 9