Self-promoted DNA interstrand cross-link formation by an abasic site

J Am Chem Soc. 2008 Jul 30;130(30):9646-7. doi: 10.1021/ja8030642. Epub 2008 Jul 1.

Abstract

The C4'-oxidized abasic site (C4-AP) is produced in DNA as a result of oxidative stress. A recent report suggests that this lesion forms interstrand cross-links. Using duplexes in which C4-AP is produced from a synthetic precursor, we show that the lesion produces interstrand cross-links in which both strands are in tact and cross-links in which the C4-AP containing strand is cleaved. The yields of these products are dependent upon the surrounding nucleotide sequence. When C4-AP is opposed by dA, cross-link formation occurs exclusively with an adjacent dA on the 5'-side. Moreover, formation of the lower molecular weight cross-link is promoted by an opposing adenine. When the opposing dA is replaced by dT, the activity of the adenine can be rescued by adding the free base. This is a rare example in which DNA promotes its own modification, an observation that is all the more important because of the biological significance of the product produced.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adenine / analogs & derivatives
  • Adenine / chemistry
  • Base Pairing
  • Base Sequence
  • DNA / chemistry*
  • DNA / genetics
  • DNA Damage*
  • Oxidation-Reduction
  • Thymidine / analogs & derivatives
  • Thymidine / chemistry

Substances

  • DNA
  • Adenine
  • Thymidine