HisE11 and HisF8 provide bis-histidyl heme hexa-coordination in the globin domain of Geobacter sulfurreducens globin-coupled sensor

J Mol Biol. 2009 Feb 13;386(1):246-60. doi: 10.1016/j.jmb.2008.12.023. Epub 2008 Dec 16.

Abstract

Among heme-based sensors, recent phylogenomic and sequence analyses have identified 34 globin coupled sensors (GCS), to which an aerotactic or gene-regulating function has been tentatively ascribed. Here, the structural and biochemical characterization of the globin domain of the GCS from Geobacter sulfurreducens (GsGCS(162)) is reported. A combination of X-ray crystallography (crystal structure at 1.5 A resolution), UV-vis and resonance Raman spectroscopy reveals the ferric GsGCS(162) as an example of bis-histidyl hexa-coordinated GCS. In contrast to the known hexa-coordinated globins, the distal heme-coordination in ferric GsGCS(162) is provided by a His residue unexpectedly located at the E11 topological site. Furthermore, UV-vis and resonance Raman spectroscopy indicated that ferrous deoxygenated GsGCS(162) is a penta-/hexa-coordinated mixture, and the heme hexa-to-penta-coordination transition does not represent a rate-limiting step for carbonylation kinetics. Lastly, electron paramagnetic resonance indicates that ferrous nitrosylated GsGCS(162) is a penta-coordinated species, where the proximal HisF8-Fe bond is severed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Crystallography, X-Ray
  • Databases, Protein
  • Electron Spin Resonance Spectroscopy
  • Geobacter / metabolism*
  • Globins / chemistry*
  • Globins / metabolism
  • Heme / chemistry*
  • Heme / metabolism
  • Histidine / chemistry*
  • Histidine / genetics
  • Models, Molecular
  • Protein Structure, Quaternary
  • Spectrum Analysis, Raman

Substances

  • Bacterial Proteins
  • Heme
  • Histidine
  • Globins

Associated data

  • PDB/2W31
  • PDB/R2W31SF