II. Kinetic pathways of switching optical conformations in DsRed by 2D Fourier imaging correlation spectroscopy

J Phys Chem B. 2009 May 14;113(19):6854-60. doi: 10.1021/jp901542b.

Abstract

The kinetics of biomolecular conformational transitions can be studied by two-dimensional (2D) magnetic resonance and optical spectroscopic methods. Here we apply polarization-modulated Fourier imaging correlation spectroscopy (PM-FICS) to demonstrate a new approach to 2D optical spectroscopy. PM-FICS enables measurements of conformational fluctuations of fluorescently labeled macromolecules on a broad range of time scales (10(-3)-10(2) s). We examine the optical switching pathways of DsRed, a tetrameric complex of fluorescent protein subunits. An analysis of PM-FICS coordinate trajectories, in terms of 2D spectra and joint probability distributions, provides detailed information about the transition pathways between distinct dipole-coupled DsRed conformations.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Color
  • Fourier Analysis*
  • Kinetics
  • Luminescent Proteins / chemistry*
  • Molecular Conformation*
  • Optical Phenomena*
  • Spectrum Analysis

Substances

  • Luminescent Proteins
  • fluorescent protein 583