Fluorescence detection of single-nucleotide polymorphisms with a single, self-complementary, triple-stem DNA probe

Angew Chem Int Ed Engl. 2009;48(24):4354-8. doi: 10.1002/anie.200900369.

Abstract

Singled out for its singularity: In a single-step, single-component, fluorescence-based method for the detection of single-nucleotide polymorphisms at room temperature, the sensor is comprised of a single, self-complementary DNA strand that forms a triple-stem structure. The large conformational change that occurs upon binding to perfectly matched (PM) targets results in a significant increase in fluorescence (see picture; F = fluorophore, Q = quencher).

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Sequence
  • DNA Probes / chemistry*
  • DNA Probes / genetics
  • Fluorescent Dyes / chemistry*
  • Polymorphism, Single Nucleotide*
  • Spectrometry, Fluorescence
  • Thermodynamics

Substances

  • DNA Probes
  • Fluorescent Dyes