Dynamical approaches to modeling developmental gene regulatory networks

Birth Defects Res C Embryo Today. 2009 Jun;87(2):131-42. doi: 10.1002/bdrc.20150.

Abstract

The network of interacting regulatory signals within a cell comprises one of the most complex and powerful computational systems in biology. Gene regulatory networks (GRNs) play a key role in transforming the information encoded in a genome into morphological form. To achieve this feat, GRNs must respond to and integrate environmental signals with their internal dynamics in a robust and coordinated fashion. The highly dynamic nature of this process lends itself to interpretation and analysis in the language of dynamical models. Modeling provides a means of systematically untangling the complicated structure of GRNs, a framework within which to simulate the behavior of reconstructed systems and, in some cases, suites of analytic tools for exploring that behavior and its implications. This review provides a general background to the idea of treating a regulatory network as a dynamical system, and describes a variety of different approaches that have been taken to the dynamical modeling of GRNs.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Computer Simulation
  • Gene Expression Regulation, Developmental*
  • Gene Regulatory Networks*
  • Humans
  • Mammals / genetics*
  • Models, Genetic*
  • Plants / genetics*