ExpressionView--an interactive viewer for modules identified in gene expression data

Andreas Lüscher; Gábor Csárdi; Aitana Morton de Lachapelle; Zoltán Kutalik; Bastian Peter; Sven Bergmann

doi:10.1093/bioinformatics/btq334

ExpressionView--an interactive viewer for modules identified in gene expression data

Bioinformatics. 2010 Aug 15;26(16):2062-3. doi: 10.1093/bioinformatics/btq334. Epub 2010 Jul 29.

Authors

Andreas Lüscher¹, Gábor Csárdi, Aitana Morton de Lachapelle, Zoltán Kutalik, Bastian Peter, Sven Bergmann

Affiliation

¹ Swiss Institute of Bioinformatics, University of Lausanne, Lausanne, Switzerland.

PMID: 20671149
DOI: 10.1093/bioinformatics/btq334

Abstract

Summary: ExpressionView is an R package that provides an interactive graphical environment to explore transcription modules identified in gene expression data. A sophisticated ordering algorithm is used to present the modules with the expression in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual modules and access biologically relevant metadata associated with them.

Availability: http://www.unil.ch/cbg/ExpressionView. Screenshots, tutorials and sample data sets can be found on the ExpressionView web site.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Algorithms
Computer Graphics
Gene Expression
Gene Expression Profiling / methods*
Software*
User-Computer Interface