MYC amplification as a prognostic marker of early-stage lung adenocarcinoma identified by whole genome copy number analysis

Clin Cancer Res. 2011 Mar 15;17(6):1481-9. doi: 10.1158/1078-0432.CCR-10-2484. Epub 2010 Dec 10.

Abstract

Purpose: Even in small-sized (≤ 2 cm in greatest dimension) and/or pathologic stage I lung adenocarcinoma (ADC), a considerable proportion of the patients will relapse within 5 years and show poor prognosis. The purpose of this study was to identify genetic alterations that define prognosis of patients with early-stage lung ADC.

Experimental design: Regions of copy number alterations in 65 small-sized lung ADCs and 40 ADC cell lines were determined by using GeneChip Human Mapping 10-K and 250-K single-nucleotide polymorphism (SNP) arrays, respectively. A copy number assay based on real-time genomic PCR (RT-G-PCR) was done for 60 small-sized lung ADCs and 162 stage I lung ADCs.

Results: Several regions on chromosomes 5p, 7p, 8q, and 14q were frequently (>10%) amplified in both small-sized ADCs and lung ADC cell lines. In particular, the MYC gene was mapped in the minimum common region at chromosome 8q24.21, and therefore was indicated to be a target of gene amplification in lung ADCs. MYC amplification correlated with poor prognosis (P = 0.031) of patients with small-sized ADCs. MYC amplification detected by SNP array analysis was well reproduced by RT-G-PCR analysis. Therefore, to investigate the utility of MYC amplification as a prognostic marker for early-stage lung ADCs, 162 stage I lung ADCs were subjected to the analysis. MYC amplification was associated with relapse-free survival in these patients (P = 0.013 by multivariate Cox proportional hazard model analysis).

Conclusions: These results strongly indicate that MYC amplification is a prognostic marker of patients with early-stage lung ADCs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenocarcinoma / genetics
  • Adenocarcinoma / metabolism
  • Adenocarcinoma of Lung
  • Chromosomes / ultrastructure
  • Disease-Free Survival
  • Gene Amplification
  • Gene Dosage
  • Genes, myc / genetics*
  • Humans
  • Lung Neoplasms / genetics*
  • Lung Neoplasms / metabolism
  • Medical Oncology / methods
  • Oligonucleotide Array Sequence Analysis
  • Polymorphism, Single Nucleotide
  • Prognosis
  • Proportional Hazards Models
  • Proto-Oncogene Proteins c-myc / metabolism*
  • Recurrence
  • Reverse Transcriptase Polymerase Chain Reaction

Substances

  • Proto-Oncogene Proteins c-myc