Single-nucleotide polymorphisms in the KCNN3 gene associate with preterm birth

Reprod Sci. 2011 Mar;18(3):286-95. doi: 10.1177/1933719110391277. Epub 2011 Jan 25.

Abstract

The objectives were to determine whether single-nucleotide polymorphisms (SNPs) in KCNN3 (encodes the small conductance calcium-activated potassium channel subfamily N, member 3), associate with preterm birth (PTB). In all, 602 preterm families with at least 1 preterm (<37 weeks gestation) infant were studied: DNA from the infant and one or both parents were genotyped for 16 SNPs in KCNN3. A region of interest within KCNN3 was sequenced in 512 Caucasian non-Hispanic mothers (412 with preterm deliveries;100 who delivered at term). Family-based association testing was used for genotyping analysis; Fisher exact test was used for sequencing analysis. Six SNPs (rs1218585, rs4845396, rs12058931, rs1218568, rs6426985, and rs4845394) were associated with PTB (all Ps < .05). These variations were all located within the intronic region between exons 1 and 2. Maternal sequencing revealed an association of 3 SNPs with spontaneous PTB; rs1218585 (P = .007), rs1218584 (P = .05), and a novel SNP at chromosome1:153099353 (P = .02). Polymorphisms in KCNN3 are associated with PTB and investigation into the functional significance of these allelic changes is warranted.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / chemistry
  • DNA / genetics
  • Female
  • Genotype
  • Humans
  • Infant, Newborn
  • Infant, Premature
  • Male
  • Polymerase Chain Reaction
  • Polymorphism, Single Nucleotide
  • Pregnancy
  • Premature Birth / genetics*
  • Small-Conductance Calcium-Activated Potassium Channels / genetics*

Substances

  • KCNN3 protein, human
  • Small-Conductance Calcium-Activated Potassium Channels
  • DNA