Dehaloperoxidase-hemoglobin from Amphitrite ornata is primarily a monomer in solution

J Phys Chem B. 2011 Apr 14;115(14):4266-72. doi: 10.1021/jp201156r. Epub 2011 Mar 21.

Abstract

The crystal structures of the dehaloperoxidase-hemoglobin from A. ornata (DHP A) each report a crystallographic dimer in the unit cell. Yet, the largest dimer interface observed is 450 Å(2), an area significantly smaller than the typical value of 1200-2000 Å(2) and in contrast to the extensive interface region of other known dimeric hemoglobins. To examine the oligomerization state of DHP A in solution, we used gel permeation by fast protein liquid chromatography and small-angle X-ray scattering (SAXS). Gel permeation experiments demonstrate that DHP A elutes as a monomer (15.5 kDa) and can be separated from green fluorescent protein, which has a molar mass of 27 kDa, near the 31 kDa expected for the DHP A dimer. By SAXS, we found that DHP A is primarily monomeric in solution, but with a detectable level of dimer (~10%), under all conditions studied up to a protein concentration of 3.0 mM. These concentrations are likely 10-100-fold lower than the K(d) for dimer formation. Additionally, there was no significant effect either on the overall conformation of DHP A or its monomer-dimer equilibrium upon addition of the DHP A inhibitor, 4-iodophenol.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Crystallography, X-Ray
  • Dimerization
  • Hemoglobins / chemistry*
  • Peroxidases / chemistry*
  • Polychaeta / enzymology
  • Polychaeta / metabolism*
  • Protein Conformation
  • Scattering, Small Angle
  • Solutions / chemistry
  • X-Ray Diffraction

Substances

  • Hemoglobins
  • Solutions
  • DHP I dehaloperoxidase
  • Peroxidases