Sulfamate proton solvent exchange in heparin oligosaccharides: evidence for a persistent hydrogen bond in the antithrombin-binding pentasaccharide Arixtra

Glycobiology. 2012 Sep;22(9):1173-82. doi: 10.1093/glycob/cws085. Epub 2012 May 16.

Abstract

Sulfamate groups (NHSO(3)(-)) are important structural elements in the glycosaminoglycans (GAGs) heparin and heparan sulfate (HS). In this work, proton nuclear magnetic resonance (NMR) line-shape analysis is used to explore the solvent exchange properties of the sulfamate NH groups within heparin-related mono-, di-, tetra- and pentasaccharides as a function of pH and temperature. The results of these experiments identified a persistent hydrogen bond within the Arixtra (fondaparinux sodium) pentasaccharide between the internal glucosamine sulfamate NH and the adjacent 3-O-sulfo group. This discovery provides new insights into the solution structure of the Arixtra pentasaccharide and suggests that 3-O-sulfation of the heparin N-sulfoglucosamine (GlcNS) residues pre-organize the secondary structure in a way that facilitates binding to antithrombin-III. NMR studies of the GlcNS NH groups can provide important information about heparin structure complementary to that available from NMR spectral analysis of the carbon-bound protons.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Anticoagulants / chemistry*
  • Antithrombin III / chemistry*
  • Binding Sites
  • Carbohydrate Conformation
  • Carbohydrate Sequence
  • Fondaparinux
  • Heparin / chemistry*
  • Heparitin Sulfate / chemistry*
  • Humans
  • Hydrogen Bonding
  • Hydrogen-Ion Concentration
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Oligosaccharides / chemistry
  • Polysaccharides / chemistry*
  • Protein Binding
  • Protons*
  • Solutions
  • Sulfonic Acids / chemistry
  • Temperature

Substances

  • Anticoagulants
  • Oligosaccharides
  • Polysaccharides
  • Protons
  • Solutions
  • Sulfonic Acids
  • Antithrombin III
  • Heparin
  • Heparitin Sulfate
  • sulfamic acid
  • Fondaparinux