Current opportunities and challenges: genome-wide association studies on pigmentation and skin cancer

Pigment Cell Melanoma Res. 2012 Sep;25(5):612-7. doi: 10.1111/j.1755-148X.2012.01023.x. Epub 2012 Jul 12.

Abstract

Genome-wide association studies (GWAS) have become a widely used approach for genetic association studies of various human traits. A few GWAS have been conducted with the goal of identifying novel loci for pigmentation traits, melanoma, and non-melanoma skin cancer. Nevertheless, the phenotype variation explained by the genetic markers identified so far is limited. In this review, we discuss the GWAS study design and its application in pigmentation and skin cancer research. Furthermore, we summarize recent developments in post-GWAS activities such as meta-analysis, pathway analysis, and risk prediction.

Publication types

  • Review

MeSH terms

  • Genome-Wide Association Study*
  • Humans
  • Polymorphism, Single Nucleotide / genetics
  • Quantitative Trait, Heritable
  • Research Design
  • Skin Neoplasms / genetics*
  • Skin Neoplasms / physiopathology*
  • Skin Pigmentation / genetics*