Rapid characterization of mitochondrial genome rearrangements in Australian songbirds using next-generation sequencing technology

J Hered. 2012 Nov-Dec;103(6):882-6. doi: 10.1093/jhered/ess091. Epub 2012 Nov 1.

Abstract

Using next-generation sequencing technology, we describe the complete mitochondrial genomes for 5 Australian passerine birds (Epthianura albifrons, Petroica phoenicea, Petroica goodenovii, Petroica boodang, and Eopsaltria australis). We successfully assemble each mitogenome de novo using just 1/8th of a Roche GL FSX 454 pyrosequencing plate. From the assembled mitogenomes, we identify 2 different mitochondrial gene arrangements in the region spanning 5'-3' from Cytochrome B to 12s RNA. These gene arrangements represent 2 of the 4 known avian mitochondrial gene arrangements. Our results, together with other previously described avian mitogenomes, highlight that certain mitochondrial rearrangements appear to have arisen multiple times.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphatases / genetics
  • Animals
  • Cytochromes b / genetics
  • Gene Order*
  • Genome, Mitochondrial*
  • Molecular Sequence Data
  • RNA, Ribosomal
  • RNA, Ribosomal, 16S
  • RNA, Transfer
  • Sequence Analysis, DNA / methods
  • Songbirds / genetics*

Substances

  • RNA, Ribosomal
  • RNA, Ribosomal, 16S
  • RNA, ribosomal, 12S
  • RNA, Transfer
  • Cytochromes b
  • Adenosine Triphosphatases

Associated data

  • GENBANK/JX901072
  • GENBANK/JX901073
  • GENBANK/JX901074
  • GENBANK/JX901075
  • GENBANK/JX901076