Structural insights into the substrate specificity of a 6-phospho-β-glucosidase BglA-2 from Streptococcus pneumoniae TIGR4

J Biol Chem. 2013 May 24;288(21):14949-58. doi: 10.1074/jbc.M113.454751. Epub 2013 Apr 11.

Abstract

The 6-phospho-β-glucosidase BglA-2 (EC 3.2.1.86) from glycoside hydrolase family 1 (GH-1) catalyzes the hydrolysis of β-1,4-linked cellobiose 6-phosphate (cellobiose-6'P) to yield glucose and glucose 6-phosphate. Both reaction products are further metabolized by the energy-generating glycolytic pathway. Here, we present the first crystal structures of the apo and complex forms of BglA-2 with thiocellobiose-6'P (a non-metabolizable analog of cellobiose-6'P) at 2.0 and 2.4 Å resolution, respectively. Similar to other GH-1 enzymes, the overall structure of BglA-2 from Streptococcus pneumoniae adopts a typical (β/α)8 TIM-barrel, with the active site located at the center of the convex surface of the β-barrel. Structural analyses, in combination with enzymatic data obtained from site-directed mutant proteins, suggest that three aromatic residues, Tyr(126), Tyr(303), and Trp(338), at subsite +1 of BglA-2 determine substrate specificity with respect to 1,4-linked 6-phospho-β-glucosides. Moreover, three additional residues, Ser(424), Lys(430), and Tyr(432) of BglA-2, were found to play important roles in the hydrolytic selectivity toward phosphorylated rather than non-phosphorylated compounds. Comparative structural analysis suggests that a tryptophan versus a methionine/alanine residue at subsite -1 may contribute to the catalytic and substrate selectivity with respect to structurally similar 6-phospho-β-galactosidases and 6-phospho-β-glucosidases assigned to the GH-1 family.

Keywords: 6-Phospho-β-glucosidase; Crystal Structure; Enzyme Catalysis; Enzyme Mechanisms; PEP-PTS; Pneumonia; Streptococcus; Substrate Specificity; Thiocellobiose 6-Phosphate.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Catalytic Domain
  • Crystallography, X-Ray
  • Glucosidases / chemistry*
  • Glucosidases / genetics
  • Glucosidases / metabolism
  • Mutation, Missense
  • Protein Structure, Secondary
  • Streptococcus pneumoniae / enzymology*
  • Streptococcus pneumoniae / genetics
  • Structure-Activity Relationship
  • Substrate Specificity / physiology

Substances

  • Bacterial Proteins
  • Glucosidases
  • 6-phospho-beta-glucosidase

Associated data

  • PDB/4IPL
  • PDB/4IPN