Deconvoluting the reactivity of two intermediates formed from modified pyrimidines

Org Lett. 2013 Jul 19;15(14):3618-21. doi: 10.1021/ol401472m. Epub 2013 Jul 3.

Abstract

Generation of the 5-(2'-deoxyuridinyl)methyl radical (6) was reexamined. Trapping by 4-hydroxy-2,2,6,6-tetramethylpiperidin-1-oxyl confirms that 6 is generated. However, trapping by methoxyamine reveals that the respective carbocation (10) is also produced. Examining the effects of these traps on products in DNA reveals that the carbocation and not 6 yields interstrand cross-links. Cross-link formation from the carbocation is consistent with DFT calculations that predict that addition at the N1 position of dA is essentially barrierless.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cross-Linking Reagents / chemistry*
  • Cyclic N-Oxides / chemistry*
  • Deoxyuridine / analogs & derivatives*
  • Deoxyuridine / chemistry
  • Molecular Structure
  • Pyrimidines / chemistry*
  • Spin Labels

Substances

  • 5-(2'-deoxyuridinyl)methyl
  • Cross-Linking Reagents
  • Cyclic N-Oxides
  • Pyrimidines
  • Spin Labels
  • tempol
  • Deoxyuridine