Santacruzamate A, a potent and selective histone deacetylase inhibitor from the Panamanian marine cyanobacterium cf. Symploca sp

J Nat Prod. 2013 Nov 22;76(11):2026-33. doi: 10.1021/np400198r. Epub 2013 Oct 28.

Abstract

A dark brown tuft-forming cyanobacterium, morphologically resembling the genus Symploca, was collected during an expedition to the Coiba National Park, a UNESCO World Heritage Site on the Pacific coast of Panama. Phylogenetic analysis of its 16S rRNA gene sequence indicated that it is 4.5% divergent from the type strain for Symploca and thus is likely a new genus. Fractionation of the crude extract led to the isolation of a new cytotoxin, designated santacruzamate A (1), which has several structural features in common with suberoylanilide hydroxamic acid [(2), SAHA, trade name Vorinostat], a clinically approved histone deacetylase (HDAC) inhibitor used to treat refractory cutaneous T-cell lymphoma. Recognition of the structural similarly of 1 and SAHA led to the characterization of santacruzamate A as a picomolar level selective inhibitor of HDAC2, a Class I HDAC, with relatively little inhibition of HDAC4 or HDAC6, both Class II HDACs. As a result, chemical syntheses of santacruzamate A as well as a structurally intriguing hybrid molecule, which blends aspects of both agents (1 and 2), were achieved and evaluated for their HDAC activity and specificity.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Carbamates / chemistry
  • Carbamates / isolation & purification
  • Carbamates / pharmacology*
  • Cyanobacteria / chemistry*
  • Cyanobacteria / genetics
  • Cytotoxins / chemistry
  • Cytotoxins / isolation & purification*
  • Cytotoxins / pharmacology
  • Drug Screening Assays, Antitumor
  • HCT116 Cells
  • Histone Deacetylase Inhibitors / chemistry
  • Histone Deacetylase Inhibitors / isolation & purification*
  • Histone Deacetylase Inhibitors / pharmacology*
  • Humans
  • Hydroxamic Acids / pharmacology
  • Leishmania donovani / drug effects
  • Lymphoma, T-Cell
  • Molecular Structure
  • Panama
  • Parasitic Sensitivity Tests
  • Plasmodium falciparum / drug effects
  • RNA, Ribosomal, 16S / genetics
  • Structure-Activity Relationship
  • Trypanosoma cruzi / drug effects
  • Vorinostat

Substances

  • Carbamates
  • Cytotoxins
  • Histone Deacetylase Inhibitors
  • Hydroxamic Acids
  • RNA, Ribosomal, 16S
  • santacruzamate A
  • Vorinostat