Nitrite-reductase and peroxynitrite isomerization activities of Methanosarcina acetivorans protoglobin

PLoS One. 2014 May 14;9(5):e95391. doi: 10.1371/journal.pone.0095391. eCollection 2014.

Abstract

Within the globin superfamily, protoglobins (Pgb) belong phylogenetically to the same cluster of two-domain globin-coupled sensors and single-domain sensor globins. Multiple functional roles have been postulated for Methanosarcina acetivorans Pgb (Ma-Pgb), since the detoxification of reactive nitrogen and oxygen species might co-exist with enzymatic activity(ies) to facilitate the conversion of CO to methane. Here, the nitrite-reductase and peroxynitrite isomerization activities of the CysE20Ser mutant of Ma-Pgb (Ma-Pgb*) are reported and analyzed in parallel with those of related heme-proteins. Kinetics of nitrite-reductase activity of ferrous Ma-Pgb* (Ma-Pgb*-Fe(II)) is biphasic and values of the second-order rate constant for the reduction of NO2- to NO and the concomitant formation of nitrosylated Ma-Pgb*-Fe(II) (Ma-Pgb*-Fe(II)-NO) are k(app1)= 9.6 ± 0.2 M(-1) s(-1) and k(app2) = 1.2 ± 0.1 M(-1) s(-1) (at pH 7.4 and 20 °C). The k(app1) and k(app2) values increase by about one order of magnitude for each pH unit decrease, between pH 8.3 and 6.2, indicating that the reaction requires one proton. On the other hand, kinetics of peroxynitrite isomerization catalyzed by ferric Ma-Pgb* (Ma-Pgb*-Fe(III)) is monophasic and values of the second order rate constant for peroxynitrite isomerization by Ma-Pgb*-Fe(III) and of the first order rate constant for the spontaneous conversion of peroxynitrite to nitrate are h(app) = 3.8 × 10(4 )M(-1) s(-1) and h0 = 2.8 × 10(-1) s(-1) (at pH 7.4 and 20 °C). The pH-dependence of hon and h0 values reflects the acid-base equilibrium of peroxynitrite (pKa = 6.7 and 6.9, respectively; at 20 °C), indicating that HOONO is the species that reacts preferentially with the heme-Fe(III) atom. These results highlight the potential role of Pgbs in the biosynthesis and scavenging of reactive nitrogen and oxygen species.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acid-Base Equilibrium
  • Archaeal Proteins / chemistry*
  • Archaeal Proteins / genetics
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Ferric Compounds / chemistry
  • Ferrous Compounds / chemistry
  • Gene Expression
  • Globins / chemistry*
  • Heme / chemistry
  • Hydrogen-Ion Concentration
  • Kinetics
  • Methanosarcina / chemistry*
  • Methanosarcina / enzymology
  • Models, Molecular
  • Nitrite Reductases / chemistry*
  • Nitrite Reductases / genetics
  • Oxidation-Reduction
  • Peroxynitrous Acid / chemistry*
  • Reactive Nitrogen Species / chemistry
  • Reactive Oxygen Species / chemistry
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics

Substances

  • Archaeal Proteins
  • Ferric Compounds
  • Ferrous Compounds
  • Reactive Nitrogen Species
  • Reactive Oxygen Species
  • Recombinant Proteins
  • Peroxynitrous Acid
  • Heme
  • Globins
  • Nitrite Reductases

Grants and funding

This work was partially supported by grants from the Ministero dell’Istruzione, dell’Università e della Ricerca of Italy (PRIN 20109MXHMR_001 and Università Roma Tre, CAL 2013) to PA. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.