Flippase (FLP) recombinase-mediated marker recycling in the dermatophyte Arthroderma vanbreuseghemii

Microbiology (Reading). 2014 Oct;160(Pt 10):2122-2135. doi: 10.1099/mic.0.076562-0. Epub 2014 Jul 4.

Abstract

Biological processes can be elucidated by investigating complex networks of relevant factors and genes. However, this is not possible in species for which dominant selectable markers for genetic studies are unavailable. To overcome the limitation in selectable markers for the dermatophyte Arthroderma vanbreuseghemii (anamorph: Trichophyton mentagrophytes), we adapted the flippase (FLP) recombinase-recombination target (FRT) site-specific recombination system from the yeast Saccharomyces cerevisiae as a selectable marker recycling system for this fungus. Taking into account practical applicability, we designed FLP/FRT modules carrying two FRT sequences as well as the flp gene adapted to the pathogenic yeast Candida albicans (caflp) or a synthetic codon-optimized flp (avflp) gene with neomycin resistance (nptII) cassette for one-step marker excision. Both flp genes were under control of the Trichophyton rubrum copper-repressible promoter (PCTR4). Molecular analyses of resultant transformants showed that only the avflp-harbouring module was functional in A. vanbreuseghemii. Applying this system, we successfully produced the Ku80 recessive mutant strain devoid of any selectable markers. This strain was subsequently used as the recipient for sequential multiple disruptions of secreted metalloprotease (fungalysin) (MEP) or serine protease (SUB) genes, producing mutant strains with double MEP or triple SUB gene deletions. These results confirmed the feasibility of this system for broad-scale genetic manipulation of dermatophytes, advancing our understanding of functions and networks of individual genes in these fungi.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arthrodermataceae / genetics*
  • DNA Nucleotidyltransferases / metabolism*
  • DNA, Fungal / chemistry
  • DNA, Fungal / genetics
  • Gene Deletion
  • Gene Expression
  • Gene Targeting / methods*
  • Genetic Markers*
  • Genetics, Microbial / methods*
  • Molecular Sequence Data
  • Promoter Regions, Genetic
  • Recombination, Genetic*
  • Saccharomyces cerevisiae / enzymology
  • Saccharomyces cerevisiae / genetics
  • Sequence Analysis, DNA

Substances

  • DNA, Fungal
  • Genetic Markers
  • DNA Nucleotidyltransferases
  • FLP recombinase

Associated data

  • GENBANK/KF146901
  • GENBANK/KF146902
  • GENBANK/KF146903
  • GENBANK/KF751728
  • GENBANK/KF751729