Characterization of a novel calicivirus causing systemic infection in atlantic salmon (Salmo salar L.): proposal for a new genus of caliciviridae

PLoS One. 2014 Sep 9;9(9):e107132. doi: 10.1371/journal.pone.0107132. eCollection 2014.

Abstract

The Caliciviridae is a family of viruses infecting humans, a wide range of animals, birds and marine fish and mammals, resulting in a wide spectrum of diseases. We describe the identification and genetic characterization of a novel calicivirus replicating in Atlantic salmon. The virus has a high prevalence in farmed salmon and is found in fish suffering from several diseases and conditions and also in presumable healthy fish. A challenge and vaccination trial shows that the calicivirus replicates in Atlantic salmon and establishes a systemic infection, which can be reduced by vaccination with formalin-inactivated virus preparation. The virus, named Atlantic salmon calicivirus (ASCV), is found in two genetically distinct variants, a cell culture isolated and a variant sequenced directly from field material. The genomes are 7,4 kb and contain two open reading frames where typical conserved amino acid motifs and domains predict a gene order reminiscent of calicivirus genomes. Phylogenetic analysis performed on extracted capsid amino acid sequences segregated the two ASCV variants in a unique cluster sharing root with the branch of noroviruses infecting humans and the unassigned Tulane virus and St-Valérien like viruses, infecting rhesus monkey and pig, respectively, with relatively large distance to the marine calicivirus subgroup of vesiviruses. Based on the analyses presented, the ASCV is predicted to represent a new genus of Caliciviridae for which we propose the name Salovirus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Caliciviridae / genetics*
  • Caliciviridae Infections / virology*
  • Capsid Proteins / genetics
  • Cells, Cultured
  • Fish Diseases / virology
  • Genome, Viral / genetics
  • Macaca mulatta / virology
  • Phylogeny
  • Salmo salar / virology*
  • Swine / virology

Substances

  • Capsid Proteins

Grants and funding

This work was supported by the Research Council of Norway, project no. 216177, “Studies of virulence mechanisms and host responses to infection with piscine myocarditis virus (PMCV)” to ØE and by PHARMAQ. The Research Council of Norway had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Authors PN, MF-S, KL, TME and MR are employed by the funder Pharmaq AS. Pharmaq AS provided support in the form of salaries for authors PN, MF-S, KL, TME and MR and operating costs, but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.