Functional genetic variants of TNFSF15 and their association with gastric adenocarcinoma: a case-control study

PLoS One. 2014 Sep 24;9(9):e108321. doi: 10.1371/journal.pone.0108321. eCollection 2014.

Abstract

The purpose of this study was to identify functional genetic variants in the promoter of tumor necrosis factor superfamily member 15 (TNFSF15) and evaluate their effects on the risk of developing gastric adenocarcinoma. Forty DNA samples from healthy volunteers were sequenced to identify single nucleotide polymorphisms (SNPs) in the TNFSF15 promoter. Two TNFSF15 SNPs (-358 T > C and -638 A > G) were identified by direct sequencing. Next, genotypes and haplotypes of 470 gastric adenocarcinoma patients and 470 cancer-free controls were analyzed. Odds ratios (ORs) and 95% confidence intervals (CIs) were estimated by logistic regression. Serologic tests for Helicobacter pylori infection were measured by enzyme-linked immuno-sorbent assay (ELISA). Subjects carrying the TNFSF15 -358 CC genotype were at an elevated risk for developing gastric adenocarcinoma, compared with those with the -358 TT genotype (OR 1.42, 95% CI, 1.10 to 2.03). H. pylori infection was a risk factor for developing gastric adenocarcinoma (OR 2.31, 95% CI, 1.76 to 3.04). In the H. pylori infected group, subjects with TNFSF15 -358 CC genotype were at higher risks for gastric adenocarcinoma compared with those carrying -358 TT genotype (OR: 2.01, 95%CI: 1.65 to 4.25), indicating that H. pylori infection further influenced gastric adenocarcinoma susceptibility. The -358 T>C polymorphism eliminates a nuclear factor Y (NF-Y) binding site and the -358 C containing haplotypes showed significantly decreased luciferase expression compared with -358 T containing haplotypes. Collectively these findings indicate that functional genetic variants in TNFSF15 may play a role in increasing susceptibility to gastric adenocarcinoma.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenocarcinoma / genetics
  • Adenocarcinoma / microbiology*
  • Adult
  • Aged
  • Case-Control Studies
  • Female
  • Genetic Association Studies / methods*
  • Helicobacter Infections / genetics*
  • Helicobacter Infections / microbiology
  • Helicobacter pylori / immunology
  • Humans
  • Male
  • Middle Aged
  • Polymorphism, Single Nucleotide*
  • Promoter Regions, Genetic
  • Sequence Analysis, DNA
  • Stomach Neoplasms / genetics
  • Stomach Neoplasms / microbiology*
  • Tumor Necrosis Factor Ligand Superfamily Member 15 / genetics*

Substances

  • TNFSF15 protein, human
  • Tumor Necrosis Factor Ligand Superfamily Member 15

Grants and funding

This work was supported by Program for New Century Excellent Talents in University (NCET-11-0933), the National Natural Science Foundation of China (NSFC-81101483), Beijing Science and Technology Project (Z131101002813044) and the Science Fund for Distinguished Young Scholars of Hebei Scientific Committee (H2012401022). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.