Exploiting space-group symmetry in fragment-based molecular crystal calculations

J Comput Chem. 2014 Nov 15;35(30):2205-14. doi: 10.1002/jcc.23737. Epub 2014 Oct 1.

Abstract

Recent developments in fragment-based methods make it increasingly feasible to use high-level ab initio electronic structure techniques to molecular crystals. Such studies remain computationally demanding, however. Here, we describe a straightforward algorithm for exploiting space-group symmetry in fragment-based methods which often provides computational speed-ups of several fold or more. This algorithm does not require a priori specification of the space group or symmetry operators. Rather, the symmetrically equivalent fragments are identified automatically by aligning the individual fragments along their principle axes of inertia and testing for equivalence with other fragments. The symmetry operators relating equivalent fragments can then be worked out easily. Implementation of this algorithm for computing energies, nuclear gradients with respect to both atomic coordinates and lattice parameters, and the nuclear hessian is described.

Keywords: electronic structure theory; fragment methods; molecular crystals; space-group symmetry.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Acetamides / chemistry*
  • Acetic Acid / chemistry*
  • Algorithms
  • Crystallization
  • Formamides / chemistry*
  • Imidazoles / chemistry*
  • Molecular Structure
  • Quantum Theory

Substances

  • Acetamides
  • Formamides
  • Imidazoles
  • formamide
  • imidazole
  • acetamide
  • Acetic Acid