Enhanced recA protein binding to Z DNA represents a kinetic perturbation of a general duplex DNA binding pathway

J Biol Chem. 1989 Dec 25;264(36):21848-56.

Abstract

recA protein binding to duplex DNA is enhanced when a B form DNA substrate is replaced with a left-handed Z form helix. This represents a kinetic rather than an equilibrium effect. Binding to Z DNA is much faster than binding to B DNA. In other respects, binding to the two DNA forms is quite similar. recA protein binds to B or Z DNA with a stoichiometry of 1 monomer/4 base pairs. The final protein filament exhibits a right-handed helical structure when either B or Z form DNAs are bound. There are only two evident differences: the kcat for ATP hydrolysis is reduced 3-4-fold when Z DNA is bound, and recA binding at equilibrium is less stable on Z DNA than on B DNA. At steady state, the binding favors B DNA in competition experiments. The results indicate that Z DNA binding by recA protein follows the same pathway as for recA binding to B DNA, but that the nucleation step is faster on the Z form helix.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • DNA / metabolism*
  • DNA / ultrastructure
  • Escherichia coli / metabolism
  • Hydrogen-Ion Concentration
  • Kinetics
  • Microscopy, Electron
  • Nucleic Acid Conformation*
  • Polydeoxyribonucleotides / metabolism*
  • Protein Binding
  • Rec A Recombinases / isolation & purification
  • Rec A Recombinases / metabolism*
  • Rec A Recombinases / ultrastructure
  • Ribonucleoproteins / ultrastructure
  • Structure-Activity Relationship

Substances

  • Polydeoxyribonucleotides
  • Ribonucleoproteins
  • DNA
  • Rec A Recombinases