Genomic Annotation Resources in R/Bioconductor

Methods Mol Biol. 2016:1418:67-90. doi: 10.1007/978-1-4939-3578-9_4.

Abstract

Annotation resources make up a significant proportion of the Bioconductor project (Huber et al., Nat Methods 12:115-121, 2015). And there are also a diverse set of online resources available which are accessed using specific packages. Here we describe the most popular of these resources and give some high level examples on how to use them.

Keywords: Annotation; Bioconductor; Genomics; Next-generation sequencing; R.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Computational Biology / methods*
  • Genomics / methods*
  • Molecular Sequence Annotation / methods*
  • Software*