A nonsense mutation in the DNA repair factor Hebo causes mild bone marrow failure and microcephaly

J Exp Med. 2016 May 30;213(6):1011-28. doi: 10.1084/jem.20151183. Epub 2016 May 16.

Abstract

Inherited bone marrow failure syndromes are human conditions in which one or several cell lineages of the hemopoietic system are affected. They are present at birth or may develop progressively. They are sometimes accompanied by other developmental anomalies. Three main molecular causes have been recognized to result in bone marrow failure syndromes: (1) defects in the Fanconi anemia (FA)/BRCA DNA repair pathway, (2) defects in telomere maintenance, and (3) abnormal ribosome biogenesis. We analyzed a patient with mild bone marrow failure and microcephaly who did not present with the typical FA phenotype. Cells from this patient showed increased sensitivity to ionizing radiations and phleomycin, attesting to a probable DNA double strand break (dsb) repair defect. Linkage analysis and whole exome sequencing revealed a homozygous nonsense mutation in the ERCC6L2 gene. We identified a new ERCC6L2 alternative transcript encoding the DNA repair factor Hebo, which is critical for complementation of the patient's DNAdsb repair defect. Sequence analysis revealed three structured regions within Hebo: a TUDOR domain, an adenosine triphosphatase domain, and a new domain, HEBO, specifically present in Hebo direct orthologues. Hebo is ubiquitously expressed, localized in the nucleus, and rapidly recruited to DNAdsb's in an NBS1-dependent manner.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Bone Marrow Diseases* / genetics
  • Bone Marrow Diseases* / metabolism
  • Bone Marrow Diseases* / pathology
  • Cell Cycle Proteins / genetics
  • Cell Cycle Proteins / metabolism
  • Cell Nucleus* / genetics
  • Cell Nucleus* / metabolism
  • Cell Nucleus* / pathology
  • Cells, Cultured
  • Codon, Nonsense*
  • DNA Breaks, Double-Stranded
  • DNA Helicases* / biosynthesis
  • DNA Helicases* / genetics
  • Female
  • Gene Expression Regulation
  • Genetic Linkage
  • High-Throughput Nucleotide Sequencing
  • Homozygote*
  • Humans
  • Male
  • Microcephaly* / genetics
  • Microcephaly* / metabolism
  • Microcephaly* / pathology
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Protein Domains

Substances

  • Cell Cycle Proteins
  • Codon, Nonsense
  • NBN protein, human
  • Nuclear Proteins
  • DNA Helicases
  • ERCC6L2 protein, human

Associated data

  • GENBANK/AAH91795.1
  • GENBANK/CAD37001.1
  • GENBANK/CDP26308.1
  • GENBANK/NM_020207
  • RefSeq/NP_064592.2
  • RefSeq/XP_001391908.1
  • RefSeq/XP_002151909.1
  • RefSeq/XP_006968442.1
  • RefSeq/XP_011663528
  • PDB/1z3i
  • PDB/1z63