Single Mutations Reshape the Structural Correlation Network of the DMXAA-Human STING Complex

J Phys Chem B. 2017 Mar 9;121(9):2073-2082. doi: 10.1021/acs.jpcb.6b12472. Epub 2017 Feb 27.

Abstract

Subtle changes in protein sequences are able to alter ligand-protein interactions. Unraveling the mechanism of such phenomena is important for understanding ligand-protein interactions, including the DMXAA-STING interaction. DMXAA specifically binds to mouse STING instead of human STING. However, the S162A mutation and a newly discovered E260I mutation endow human STINGAQ with DMXAA sensitivity. Through molecular dynamics simulations, we revealed how these single mutations alter the DMXAA-STING interaction. Compared to mutated systems, structural correlations in the interaction of STINGAQ with DMXAA are stronger, and the correlations are cross-protomers in the dimeric protein. Analyses on correlation coefficients lead to the identification of two key interactions that mediate the strong cross-protomer correlation in the DMXAA-STINGAQ interaction network: DMXAA-267T-162S* and 238R-260E*. These two interactions are partially and totally interrupted by the S162A and E260I mutations, respectively. Moreover, a smaller number of water molecules are displaced upon DMXAA binding to STINGAQ than that on binding to its mutants, leading to a larger entropic penalty for the former. Considering the sensitivity of STINGAQ and two of its mutants to DMXAA, a strong structural correlation appears to discourage DMXAA-STING binding. Such an observation suggests that DMXAA derivatives, which are deprived of hydrogen-bond interaction with both 162S* and 267T, are potential agonists of human STING.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Entropy
  • Humans
  • Hydrogen Bonding
  • Membrane Proteins / chemistry*
  • Membrane Proteins / genetics*
  • Molecular Dynamics Simulation
  • Molecular Structure
  • Mutation*
  • Xanthones / chemistry*

Substances

  • Membrane Proteins
  • STING1 protein, human
  • Xanthones
  • vadimezan