Epigenome-wide association study of chronic obstructive pulmonary disease and lung function in Koreans

Epigenomics. 2017 Jul;9(7):971-984. doi: 10.2217/epi-2017-0002. Epub 2017 Jun 16.

Abstract

Aim: To identify differentially methylated probes (DMPs) and regions (DMRs) in relation to chronic obstructive pulmonary disease (COPD) and lung function traits.

Methods: We performed an epigenome-wide association study of COPD and spirometric parameters, including forced expiratory volume in 1 s (FEV1), forced vital capacity (FVC) and FEV1/FVC, in blood DNA using the Infinium HumanMethylation450 (n = 100, a Korean COPD cohort).

Results: We found one significant DMP (cg03559389, DIP2C) and 104 significant DMRs after multiple-testing correction. Of these, 34 DMRs mapped to genes differential expressed with respect to the same trait. Five of the genes were associated with more than two traits: CTU2, USP36, ZNF516, KLK10 and CPT1B.

Conclusion: We identified novel differential methylation loci related to COPD and lung function in blood DNA in Koreans and confirmed previous findings in non-Asians. Epigenetic modification could contribute to the etiology of these phenotypes.

Keywords: DNA methylation; chronic obstructive pulmonary disease; epigenome-wide association study; gene expression; lung function.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Intramural

MeSH terms

  • Aged
  • Aged, 80 and over
  • Case-Control Studies
  • DNA Methylation*
  • Epigenesis, Genetic*
  • Female
  • Genetic Loci*
  • Genome-Wide Association Study
  • Humans
  • Male
  • Middle Aged
  • Pulmonary Disease, Chronic Obstructive / genetics*
  • Pulmonary Disease, Chronic Obstructive / pathology
  • Pulmonary Disease, Chronic Obstructive / physiopathology