GATA3 rs3824662 gene polymorphism as possible risk factor for systemic lupus erythematosus

Lupus. 2018 Nov;27(13):2112-2119. doi: 10.1177/0961203318804894. Epub 2018 Oct 9.

Abstract

Background: There is no report about the association between GATA3 rs3824662 polymorphism and systemic lupus erythematosus (SLE).

Objective: To investigate the possible role of GATA3 rs3824662 polymorphism as a susceptibility risk factor for either adult SLE (aSLE) or pediatric SLE (pSLE) and to evaluate its role in the development of lupus nephritis (LN) in pSLE.

Methods: Typing of GATA3 rs3824662 polymorphism was done using real-time polymerase chain reaction for three groups; 104 pSLE patients, 140 aSLE patients and 436 age- and sex-matched healthy controls.

Results: Non-significant differences were found between SLE patients and healthy controls for the allele and genotype frequencies of GATA3 rs3824662 ( p > 0.05). In pSLE; the AC genotype was associated with LN ( p = 0.04); the A allele and AC genotype were associated with persistent proteinuria ( p = 0.036 and 0.01, respectively) and both the A allele and AA genotype were associated with higher chronicity index ( p = 0.031 and 0.04, respectively). In aSLE; the C allele was associated with cellular cast ( p = 0.03) and thrombocytopenia ( p = 0.01). Logistic regression analysis revealed significant association between the AC+AA genotypes and the prediction of LN and renal active disease in pSLE ( p = 0.04 and 0.01, respectively).

Conclusion: GATA3 rs3824662 is not associated with susceptibility to SLE either in adult or in pediatric patients; however, in pSLE patients, the heterozygous AC genotype could be considered a risk factor for LN. At the same time, the AC and AA genotypes could be considered as predictors for LN and active renal disease. However, the small sample size is a limiting factor of the present study when interpreting the positive association.

Keywords: Egyptian; GATA3 rs3824662; RT-PCR; SLE; SNP; adult; juvenile.

MeSH terms

  • Adolescent
  • Adult
  • Alleles
  • Case-Control Studies
  • Child
  • Egypt
  • Female
  • GATA3 Transcription Factor / genetics*
  • Genetic Association Studies
  • Genetic Predisposition to Disease
  • Humans
  • Kaplan-Meier Estimate
  • Logistic Models
  • Lupus Erythematosus, Systemic / genetics*
  • Lupus Nephritis / genetics*
  • Male
  • Polymorphism, Single Nucleotide
  • Risk Factors

Substances

  • GATA3 Transcription Factor
  • GATA3 protein, human