TBC1D8B Mutations Implicate RAB11-Dependent Vesicular Trafficking in the Pathogenesis of Nephrotic Syndrome

J Am Soc Nephrol. 2019 Dec;30(12):2338-2353. doi: 10.1681/ASN.2019040414. Epub 2019 Nov 15.

Abstract

Background: Mutations in about 50 genes have been identified as monogenic causes of nephrotic syndrome, a frequent cause of CKD. These genes delineated the pathogenetic pathways and rendered significant insight into podocyte biology.

Methods: We used whole-exome sequencing to identify novel monogenic causes of steroid-resistant nephrotic syndrome (SRNS). We analyzed the functional significance of an SRNS-associated gene in vitro and in podocyte-like Drosophila nephrocytes.

Results: We identified hemizygous missense mutations in the gene TBC1D8B in five families with nephrotic syndrome. Coimmunoprecipitation assays indicated interactions between TBC1D8B and active forms of RAB11. Silencing TBC1D8B in HEK293T cells increased basal autophagy and exocytosis, two cellular functions that are independently regulated by RAB11. This suggests that TBC1D8B plays a regulatory role by inhibiting endogenous RAB11. Coimmunoprecipitation assays showed TBC1D8B also interacts with the slit diaphragm protein nephrin, and colocalizes with it in immortalized cell lines. Overexpressed murine Tbc1d8b with patient-derived mutations had lower affinity for endogenous RAB11 and nephrin compared with wild-type Tbc1d8b protein. Knockdown of Tbc1d8b in Drosophila impaired function of the podocyte-like nephrocytes, and caused mistrafficking of Sns, the Drosophila ortholog of nephrin. Expression of Rab11 RNAi in nephrocytes entailed defective delivery of slit diaphragm protein to the membrane, whereas RAB11 overexpression revealed a partial phenotypic overlap to Tbc1d8b loss of function.

Conclusions: Novel mutations in TBC1D8B are monogenic causes of SRNS. This gene inhibits RAB11. Our findings suggest that RAB11-dependent vesicular nephrin trafficking plays a role in the pathogenesis of nephrotic syndrome.

Keywords: Drosophila; endocytosis; genetic renal disease; nephrocyte; nephrotic syndrome; podocyte.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Autophagy
  • Calcium-Binding Proteins / genetics*
  • Cell Line, Transformed
  • Dogs
  • Drosophila Proteins / metabolism
  • Drosophila melanogaster / metabolism
  • Exocytosis
  • Exome Sequencing
  • Gene Silencing
  • HEK293 Cells
  • Humans
  • Immunoglobulins / metabolism
  • Madin Darby Canine Kidney Cells
  • Membrane Proteins / metabolism
  • Mutation, Missense*
  • Nephrotic Syndrome / genetics*
  • Nephrotic Syndrome / metabolism
  • Phenotype
  • Podocytes / metabolism*
  • Protein Interaction Mapping
  • RNA Interference
  • RNA, Small Interfering / pharmacology
  • Transport Vesicles / physiology*
  • Vesicular Transport Proteins / genetics*
  • rab GTP-Binding Proteins / metabolism*

Substances

  • Calcium-Binding Proteins
  • Drosophila Proteins
  • Immunoglobulins
  • Membrane Proteins
  • RNA, Small Interfering
  • SNS protein, Drosophila
  • TBC1D8B protein, human
  • Vesicular Transport Proteins
  • nephrin
  • rab11 protein
  • rab GTP-Binding Proteins