Comprehensive longitudinal study of epigenetic mutations in aging

Clin Epigenetics. 2019 Dec 9;11(1):187. doi: 10.1186/s13148-019-0788-9.

Abstract

Background: The role of DNA methylation in aging has been widely studied. However, epigenetic mutations, here defined as aberrant methylation levels compared to the distribution in a population, are less understood. Hence, we investigated longitudinal accumulation of epigenetic mutations, using 994 blood samples collected at up to five time points from 375 individuals in old ages.

Results: We verified earlier cross-sectional evidence on the increase of epigenetic mutations with age, and identified important contributing factors including sex, CD19+ B cells, genetic background, cancer diagnosis, and technical artifacts. We further classified epigenetic mutations into High/Low Methylation Outliers (HMO/LMO) according to their changes in methylation, and specifically studied methylation sites (CpGs) that were prone to mutate (frequently mutated CpGs). We validated four epigenetically mutated CpGs using pyrosequencing in 93 samples. Furthermore, by using twins, we concluded that the age-related accumulation of epigenetic mutations was not related to genetic factors, hence driven by stochastic or environmental effects.

Conclusions: Here we conducted a comprehensive study of epigenetic mutation and highlighted its important role in aging process and cancer development.

Keywords: Aging; Cancer; Epigenetic mutation; Twin study.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Aged, 80 and over
  • Aging / blood
  • Aging / genetics*
  • CpG Islands
  • Cross-Sectional Studies
  • DNA Methylation*
  • Epigenesis, Genetic
  • Female
  • High-Throughput Nucleotide Sequencing / methods*
  • Humans
  • Longitudinal Studies
  • Male
  • Middle Aged
  • Mutation
  • Twins / genetics*