An Expanded Genome-Wide Association Study of Fructosamine Levels Identifies RCN3 as a Replicating Locus and Implicates FCGRT as the Effector Transcript

Diabetes. 2022 Feb 1;71(2):359-364. doi: 10.2337/db21-0320.

Abstract

Fructosamine is a measure of short-term glycemic control, which has been suggested as a useful complement to glycated hemoglobin (HbA1c) for the diagnosis and monitoring of diabetes. To date, a single genome-wide association study (GWAS) including 8,951 U.S. White and 2,712 U.S. Black individuals without a diabetes diagnosis has been published. Results in Whites and Blacks yielded different association loci, near RCN3 and CNTN5, respectively. In this study, we performed a GWAS on 20,731 European-ancestry blood donors and meta-analyzed our results with previous data from U.S. White participants from the Atherosclerosis Risk in Communities (ARIC) study (Nmeta = 29,685). We identified a novel association near GCK (rs3757840, βmeta = 0.0062; minor allele frequency [MAF] = 0.49; Pmeta = 3.66 × 10-8) and confirmed the association near RCN3 (rs113886122, βmeta = 0.0134; MAF = 0.17; Pmeta = 5.71 × 10-18). Colocalization analysis with whole-blood expression quantitative trait loci data suggested FCGRT as the effector transcript at the RCN3 locus. We further showed that fructosamine has low heritability (h2 = 7.7%), has no significant genetic correlation with HbA1c and other glycemic traits in individuals without a diabetes diagnosis (P > 0.05), but has evidence of shared genetic etiology with some anthropometric traits (Bonferroni-corrected P < 0.0012). Our results broaden knowledge of the genetic architecture of fructosamine and prioritize FCGRT for downstream functional studies at the established RCN3 locus.

Publication types

  • Meta-Analysis
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Atherosclerosis / blood
  • Atherosclerosis / epidemiology
  • Atherosclerosis / genetics
  • Calcium-Binding Proteins / genetics*
  • Cohort Studies
  • Diabetes Mellitus, Type 2 / blood
  • Diabetes Mellitus, Type 2 / epidemiology
  • Diabetes Mellitus, Type 2 / genetics
  • Female
  • Fructosamine / blood*
  • Fructosamine / metabolism
  • Gene Expression Regulation
  • Gene Frequency
  • Genetic Loci
  • Genetic Variation
  • Genome-Wide Association Study
  • Glycated Hemoglobin / metabolism
  • Histocompatibility Antigens Class I / genetics*
  • Humans
  • Male
  • Metabolic Networks and Pathways / genetics
  • Polymorphism, Single Nucleotide
  • Receptors, Fc / genetics*
  • United Kingdom / epidemiology
  • United States / epidemiology

Substances

  • Calcium-Binding Proteins
  • Glycated Hemoglobin A
  • Histocompatibility Antigens Class I
  • RCN3 protein, human
  • Receptors, Fc
  • Fructosamine
  • Fc receptor, neonatal

Associated data

  • figshare/10.2337/figshare.16933561