Analysis of antibody binding specificities in twin and SNP-genotyped cohorts reveals that antiviral antibody epitope selection is a heritable trait

Immunity. 2022 Jan 11;55(1):174-184.e5. doi: 10.1016/j.immuni.2021.12.004.

Abstract

Human immune responses to viral infections are highly variable, but the genetic factors that contribute to this variability are not well characterized. We used VirScan, a high-throughput epitope scanning technology, to analyze pan-viral antibody reactivity profiles of twins and SNP-genotyped individuals. Using these data, we determined the heritability and genomic loci associated with antibody epitope selection, response breadth, and control of Epstein-Barr virus (EBV) viral load. 107 EBV peptide reactivities were heritable and at least two Epstein-Barr nuclear antigen 2 (EBNA-2) reactivities were associated with variants in the MHC class II locus. We identified an EBV serosignature that predicted viral load in peripheral blood mononuclear cells and was associated with variants in the MHC class I locus. Our study illustrates the utility of epitope profiling to investigate the genetics of pathogen immunity, reports heritable features of the antibody response to viruses, and identifies specific HLA loci important for EBV epitope selection.

Keywords: Epstein-Barr virus; VirScan; humoral immunity; immunogenetics; viral antibody epitope selection.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Twin Study

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Antibodies, Viral / metabolism*
  • Cohort Studies
  • Epitope Mapping
  • Epitopes / genetics
  • Epitopes / metabolism*
  • Epstein-Barr Virus Infections / genetics*
  • Epstein-Barr Virus Infections / immunology
  • Epstein-Barr Virus Nuclear Antigens / genetics
  • Epstein-Barr Virus Nuclear Antigens / metabolism*
  • Female
  • Genotype*
  • HLA Antigens / genetics
  • HLA Antigens / metabolism
  • Herpesvirus 4, Human / physiology*
  • Humans
  • Immunity, Humoral
  • Immunodominant Epitopes / genetics
  • Immunodominant Epitopes / metabolism*
  • Male
  • Middle Aged
  • Peptides / genetics
  • Polymorphism, Single Nucleotide
  • Quantitative Trait, Heritable
  • Seroepidemiologic Studies
  • Viral Load
  • Viral Proteins / genetics
  • Viral Proteins / metabolism*
  • Young Adult

Substances

  • Antibodies, Viral
  • EBNA-2 protein, Human herpesvirus 4
  • Epitopes
  • Epstein-Barr Virus Nuclear Antigens
  • HLA Antigens
  • Immunodominant Epitopes
  • Peptides
  • Viral Proteins