LppDB - a Comprehensive Database for Lipopeptide based drugs: Exploring potential drug discovery aspects

Curr Pharm Biotechnol. 2023 Apr 6. doi: 10.2174/1389201024666230406084753. Online ahead of print.

Abstract

Aim: Lipopeptides are amphiphilic compounds consisting of a cyclic peptide attached to a fatty acid side chain. These are found with various medicinal properties ranging from broad-spectrum antimicrobial to anticancer properties.

Introduction: Elaborated studies on the therapeutic properties of peptides are hindered due to a lack of databases specifically dedicated to such classes of compounds where all the medicinal information of compounds is collectively studied in one place, which can accelerate the future scope of research on peptidolipidic compounds.

Method: The chemical information was retrieved from the PubChem compound database, and their metabolism information was generated through Swiss ADME. The application information about their particular pathways was obtained from different kinds of literature.

Results: A python script was developed to extract the information about lipopeptides from a CSV file, and the information was stored in MySQL Database. The database contains information for 70 lipopeptides and their biochemical information, structure, chemical and physical properties, information on industrial and medicinal applications, functions and references for lipopeptides.

Conclusion: The development of web-based database applications allows the data stored in the database to be accessed and viewed publicly.

Keywords: Lipopeptides; anticancer lipopeptides.; antimicrobial lipopeptides; database; database development; peptide database.