YeeD is an essential partner for YeeE-mediated thiosulfate uptake in bacteria and regulates thiosulfate ion decomposition

PLoS Biol. 2024 Apr 24;22(4):e3002601. doi: 10.1371/journal.pbio.3002601. eCollection 2024 Apr.

Abstract

Uptake of thiosulfate ions as an inorganic sulfur source from the environment is important for bacterial sulfur assimilation. Recently, a selective thiosulfate uptake pathway involving a membrane protein YeeE (TsuA) in Escherichia coli was characterized. YeeE-like proteins are conserved in some bacteria, archaea, and eukaryotes. However, the precise function of YeeE, along with its potential partner protein in the thiosulfate ion uptake pathway, remained unclear. Here, we assessed selective thiosulfate transport via Spirochaeta thermophila YeeE in vitro and characterized E. coli YeeD (TsuB) as an adjacent and essential protein for YeeE-mediated thiosulfate uptake in vivo. We further showed that S. thermophila YeeD possesses thiosulfate decomposition activity and that a conserved cysteine in YeeD was modified to several forms in the presence of thiosulfate. Finally, the crystal structures of S. thermophila YeeE-YeeD fusion proteins at 3.34-Å and 2.60-Å resolutions revealed their interactions. The association was evaluated by a binding assay using purified S. thermophila YeeE and YeeD. Based on these results, a model of the sophisticated uptake of thiosulfate ions by YeeE and YeeD is proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins* / metabolism
  • Biological Transport
  • Crystallography, X-Ray
  • Cysteine / metabolism
  • Escherichia coli Proteins / metabolism
  • Escherichia coli* / metabolism
  • Protein Binding
  • Thiosulfates* / metabolism

Substances

  • Thiosulfates
  • Bacterial Proteins
  • Escherichia coli Proteins
  • Cysteine

Grants and funding

This work was supported by JSPS/MEXT KAKENHI (Grant No. JP21H05157 to T.M., Grant Nos. JP22K15075, JP20K15733 to Mu.I, Grant No. JP22K15061, JP22H05567 to R.M., and Grant Nos. JP22H02567, JP22H02586, JP21H05155, JP21H05153, JP21K19226, JP21KK0125 to T.T.), MEXT as “Program for Promoting Researches on the Supercomputer Fugaku” (Development and application of large-scale simulation-based inferences for biomolecules JPMXP1020230119) and HPCI project (hp200064 and hp230209) to T.M., PRESTO (JPMJPR20E1 to Mu.I) from the Japan Science and Technology Agency (JST), and private research foundations (the Chemo-Sero-Therapeutic Research Institute, Naito Foundation, Takeda Science Foundation, G-7 Scholarship Foundation, the Sumitomo Foundation, the Institute for Fermentation (Osaka), Yamada Science Foundation, KOSÉ Cosmetology Research Foundation, and Japan Foundation for Applied Enzymology) to T.T. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.