Direct Salmonella injection into enteroid cells allows the study of host-pathogen interactions in the cytosol with high spatiotemporal resolution

PLoS Biol. 2024 Apr 29;22(4):e3002597. doi: 10.1371/journal.pbio.3002597. eCollection 2024 Apr.

Abstract

Intestinal epithelial cells (IECs) play pivotal roles in nutrient uptake and in the protection against gut microorganisms. However, certain enteric pathogens, such as Salmonella enterica serovar Typhimurium (S. Tm), can invade IECs by employing flagella and type III secretion systems (T3SSs) with cognate effector proteins and exploit IECs as a replicative niche. Detection of flagella or T3SS proteins by IECs results in rapid host cell responses, i.e., the activation of inflammasomes. Here, we introduce a single-cell manipulation technology based on fluidic force microscopy (FluidFM) that enables direct bacteria delivery into the cytosol of single IECs within a murine enteroid monolayer. This approach allows to specifically study pathogen-host cell interactions in the cytosol uncoupled from preceding events such as docking, initiation of uptake, or vacuole escape. Consistent with current understanding, we show using a live-cell inflammasome reporter that exposure of the IEC cytosol to S. Tm induces NAIP/NLRC4 inflammasomes via its known ligands flagellin and T3SS rod and needle. Injected S. Tm mutants devoid of these invasion-relevant ligands were able to grow in the cytosol of IECs despite the absence of T3SS functions, suggesting that, in the absence of NAIP/NLRC4 inflammasome activation and the ensuing cell death, no effector-mediated host cell manipulation is required to render the epithelial cytosol growth-permissive for S. Tm. Overall, the experimental system to introduce S. Tm into single enteroid cells enables investigations into the molecular basis governing host-pathogen interactions in the cytosol with high spatiotemporal resolution.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Apoptosis Regulatory Proteins / genetics
  • Apoptosis Regulatory Proteins / metabolism
  • CARD Signaling Adaptor Proteins / genetics
  • CARD Signaling Adaptor Proteins / metabolism
  • Calcium-Binding Proteins*
  • Cytosol* / metabolism
  • Cytosol* / microbiology
  • Epithelial Cells / metabolism
  • Epithelial Cells / microbiology
  • Flagellin* / metabolism
  • Host-Pathogen Interactions*
  • Inflammasomes* / metabolism
  • Intestinal Mucosa / metabolism
  • Intestinal Mucosa / microbiology
  • Mice
  • Mice, Inbred C57BL
  • Neuronal Apoptosis-Inhibitory Protein / genetics
  • Neuronal Apoptosis-Inhibitory Protein / metabolism
  • Salmonella Infections / immunology
  • Salmonella Infections / metabolism
  • Salmonella Infections / microbiology
  • Salmonella typhimurium* / metabolism
  • Salmonella typhimurium* / pathogenicity
  • Single-Cell Analysis / methods
  • Type III Secretion Systems* / metabolism

Substances

  • Type III Secretion Systems
  • Inflammasomes
  • Flagellin
  • Neuronal Apoptosis-Inhibitory Protein
  • Apoptosis Regulatory Proteins
  • Ipaf protein, mouse
  • CARD Signaling Adaptor Proteins
  • Calcium-Binding Proteins

Grants and funding

This work was supported by an European Research Council Advanced Grant (SYMBIOSES, 883077) to JAV. PRA is supported by a Novo Nordisk Foundation “Postdoc Fellowship for Research Abroad 2020 - Bioscience and Basic Biomedicine” grant (NNF20OC0059485). Work in WDH’s lab is supported by grants from the SNF (NCCR Microbiomes 51NF40_180575, NRP79). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.