Isolation and characterization of a low-abundance splice variant from the human cytomegalovirus major immediate-early gene region

J Virol. 1995 Jun;69(6):3868-72. doi: 10.1128/JVI.69.6.3868-3872.1995.

Abstract

The major immediate-early (IE) gene region of human cytomegalovirus (HCMV) encodes several proteins as a result of differential RNA splicing events. By expression vector cloning of HCMV IE mRNA, we isolated and characterized a cDNA for a novel splice variant from the major IE gene region. The RNA product is a derivative of the IE55 mRNA and contains an additional splice from nucleotides 170,635 to 170,307 in the IE2 gene region (UL122), resulting in a 1.4-kb mRNA. The predicted open reading frame codes for a 164-amino-acid protein with a calculated molecular mass of 18 kDa (IE18). Mung bean nuclease analysis and PCR were used to characterize expression of IE18 mRNA in HCMV-infected cells. While the 1.4-kb mRNA was detected in infected human fibroblasts in the presence of a protein synthesis inhibitor, it was not detectable during a normal infection. However, the 1.4-kb mRNA was readily detected in infected human monocyte-derived macrophages at IE times. These results suggest that the novel IE18 mRNA exhibits cell type-specific expression indicating differential regulation of the major IE gene region in different permissive cell types.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cell Line
  • Cloning, Molecular
  • Cytomegalovirus / genetics*
  • DNA, Complementary
  • Immediate-Early Proteins / genetics*
  • Molecular Sequence Data
  • RNA Splicing*

Substances

  • DNA, Complementary
  • IE18 protein, Human cytomegalovirus
  • Immediate-Early Proteins

Associated data

  • GENBANK/S78373